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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_10804338_10804969_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10804338 - 10804969
Intron Length:
632

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGGGTG
5'SS Class:
major
3'SS Sequence:
TTTCCCTGTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GCAGCAT
U12 Branch Point Sequence:
TGCGCTGCAGCA
Flanking Amino Acid:
VNGSRQCTDLSRNDSTITCT
Intron Amino Acid Position:
1039

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
1
63.9
42.4
Major BPS
43.3
-0.4
1.5
47.7
45.7
Major PPT
81.3
0.7
0.9
76.8
31.7
Minor 5ss
26
-2.8
3.7
36.3
48.1
Minor BPS
38.2
-0.9
2.2
47.58
43

Associated Gene:

Gene:
PLXND1
Ensembl Gene ID:
ENSAPLG00000005859
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044458
10760959 - 10837303
76345
ENSAPLT00000006231
10760959 - 10838848
77890