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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_10809701_10813137_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10809701 - 10813137
Intron Length:
3437

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
TTTCCCTCTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTCAG
U12 Branch Point Sequence:
TTTTCCCTCTCC
Flanking Amino Acid:
STSERQLPVTIQVGKFNYTI
Intron Amino Acid Position:
1268

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.9
74.6
37.4
Major BPS
55.8
0.14
1.6
65.3
43.7
Major PPT
85.6
0.8
0.7
77.5
31.2
Minor 5ss
34.4
-1.8
3.2
45.9
42.3
Minor BPS
42.3
-0.6
3.7
75.04
41.5

Associated Gene:

Gene:
PLXND1
Ensembl Gene ID:
ENSAPLG00000005859
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044458
10760959 - 10837303
76345
ENSAPLT00000006231
10760959 - 10838848
77890