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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_10816604_10817711_F

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10816604 - 10817711
Intron Length:
1108

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTCCTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTTTTCTCATGC
Flanking Amino Acid:
THPLLVGEWKIPENCRPNME
Intron Amino Acid Position:
1416

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.77
0.9
80.3
26.9
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
85.6
0.8
0.6
85.7
21.5
Minor 5ss
32.3
-2
2.7
37
33.9
Minor BPS
49.9
-0
2.1
69.92
41.8

Associated Gene:

Gene:
PLXND1
Ensembl Gene ID:
ENSAPLG00000005859
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044458
10760959 - 10837303
76345
ENSAPLT00000006231
10760959 - 10838848
77890