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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_10829138_10830280_F

Intron Information:

Intron Rank:
29
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10829138 - 10830280
Intron Length:
1143

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAGCT
5'SS Class:
strong_major
3'SS Sequence:
TTGTTCTTCGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GGCTAAG
U12 Branch Point Sequence:
CCAGGCTAAGCT
Flanking Amino Acid:
SDKKDATLSRVKDLDTEKYF
Intron Amino Acid Position:
1683

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.6
0.98
0.8
81.6
30
Major BPS
45.1
-0.3
1.7
49.3
44.7
Major PPT
84.7
0.78
0.8
80.7
31.3
Minor 5ss
33.1
-1.9
3.4
48.3
47.4
Minor BPS
39.7
-0.7
2.2
51.68
48.7

Associated Gene:

Gene:
PLXND1
Ensembl Gene ID:
ENSAPLG00000005859
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006231
10760959 - 10838848
77890
ENSAPLT00000044458
10760959 - 10837303
76345