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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_10837088_10837997_F

Intron Information:

Intron Rank:
34
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10837088 - 10837997
Intron Length:
910

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGAGTC
5'SS Class:
strong_major
3'SS Sequence:
TGTCTTTCTAAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATAACAT
U12 Branch Point Sequence:
GATAACATACCT
Flanking Amino Acid:
MNAHLAEESRKYRNEFNTNV
Intron Amino Acid Position:
1881

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
1
73.3
36.4
Major BPS
62.2
0.3
1.1
69.4
35.8
Major PPT
74.2
0.54
1
74.8
34
Minor 5ss
34.6
-1.8
3.5
42.5
44.6
Minor BPS
45.4
-0.2
2
65.36
44

Associated Gene:

Gene:
PLXND1
Ensembl Gene ID:
ENSAPLG00000005859
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006231
10760959 - 10838848
77890