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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_10838073_10838731_F

Intron Information:

Intron Rank:
35
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10838073 - 10838731
Intron Length:
659

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTGGG
5'SS Class:
strong_major
3'SS Sequence:
ACCTCTCCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAC
U12 Branch Point Sequence:
ACTGCCTCACCT
Flanking Amino Acid:
YKYAKRYRSQIVAALDANPT
Intron Amino Acid Position:
1906

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.3
1.02
0.8
76.2
39.9
Major BPS
72.7
0.56
1
75
30.1
Major PPT
76.2
0.59
0.8
69.6
30.4
Minor 5ss
32.1
-2
3.1
40.6
45.6
Minor BPS
50.5
0.09
2
70.25
46.6

Associated Gene:

Gene:
PLXND1
Ensembl Gene ID:
ENSAPLG00000005859
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006231
10760959 - 10838848
77890