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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_10843898_10843992_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10843898 - 10843992
Intron Length:
95

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTGAGTATG
5'SS Class:
strong_major
3'SS Sequence:
CTCTCCTCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GCCTGAG
U12 Branch Point Sequence:
GCAGCCTGAGGT
Flanking Amino Acid:
KQKPRTKPADAQPAPAAAKP
Intron Amino Acid Position:
172

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.74
1
79.9
34.9
Major BPS
44.9
-0.3
1.6
39
42.9
Major PPT
81.4
0.71
0.7
72.9
31.9
Minor 5ss
36.3
-1.5
2.9
47
41.7
Minor BPS
42.7
-0.4
2
54.33
46.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005857
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035823
10843426 - 10844831
1406