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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_10844654_10844815_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10844654 - 10844815
Intron Length:
162

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTAAGGGAT
5'SS Class:
major
3'SS Sequence:
GCTTCCCTCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
GCTTCCCTCACA
Flanking Amino Acid:
MEPQTHKAAGAARLS
Intron Amino Acid Position:
6

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.2
0.57
1.3
73
38.2
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
75.5
0.57
0.8
68.5
31.9
Minor 5ss
32.3
-2
3.7
45.5
43.4
Minor BPS
54.1
0.12
2.1
68.79
43.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005857
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035823
10843426 - 10844831
1406