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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_10849450_10850369_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10849450 - 10850369
Intron Length:
920

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
CTCCCTGCTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTGCAT
U12 Branch Point Sequence:
TTATCTGCATCC
Flanking Amino Acid:
YIEGFFATLGGEIALWSLVV
Intron Amino Acid Position:
121

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.8
85.7
25.5
Major BPS
62.4
0.31
1.4
73.6
41.8
Major PPT
75.6
0.58
0.8
72.4
32.3
Minor 5ss
40.8
-1
3
55
43.6
Minor BPS
45
-0.3
2.3
63.18
42.5

Associated Gene:

Gene:
RHO
Ensembl Gene ID:
ENSAPLG00000005189
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005391
10847928 - 10850730
2803