Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_10856216_10856902_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

10856216 - 10856902

Intron Length:

687

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGTGTTT

5'SS Class:

major

3'SS Sequence:

TCCTAATTCTTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCCTAAT

U12 Branch Point Sequence:

TGTCCCTCAATT

Flanking Amino Acid:

SITMCPSCFQMFHTEDYELL

Intron Amino Acid Position:

1155

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.7

0.54

1.1

72.3

39.7

Major BPS

81.9

0.79

0.9

80.1

Major PPT

71.7

0.49

0.8

69.5

35.4

Minor 5ss

41.3

-1

3.7

64.1

47.4

Minor BPS

0.68

1.5

83.06

37.7

Associated Gene:

Gene:

IFT122

Ensembl Gene ID:

ENSAPLG00000004234

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000027255

10855772 - 10888274

32503

ENSAPLT00000020502

10855772 - 10888274

32503

ENSAPLT00000004413

10855772 - 10888274

32503

ENSAPLT00000028828

10856126 - 10888274

32149

ENSAPLT00000028789

10856126 - 10888274

32149