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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_10857068_10857736_R

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10857068 - 10857736
Intron Length:
669

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAGCC
5'SS Class:
strong_major
3'SS Sequence:
TGCTCACCTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TCTTTCTAAATC
Flanking Amino Acid:
DPFTAKLSFEQGGSEFVPVV
Intron Amino Acid Position:
1100

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.1
0.95
0.8
76
31.7
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
73.9
0.54
0.9
66.6
34.5
Minor 5ss
31.7
-2.1
3.3
42.5
44.5
Minor BPS
65.4
0.46
1.6
73.1
38.8

Associated Gene:

Gene:
IFT122
Ensembl Gene ID:
ENSAPLG00000004234
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028828
10856126 - 10888274
32149
ENSAPLT00000028789
10856126 - 10888274
32149
ENSAPLT00000020502
10855772 - 10888274
32503
ENSAPLT00000036532
10856339 - 10888274
31936
ENSAPLT00000004413
10855772 - 10888274
32503