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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_10857068_10860318_R

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10857068 - 10860318
Intron Length:
3251

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTTGC
5'SS Class:
strong_major
3'SS Sequence:
TGCTCACCTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TCTTTCTAAATC
Flanking Amino Acid:
IRSKPFHDSEQGGSEFVPVV
Intron Amino Acid Position:
1045

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
76
34.8
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
73.9
0.54
0.9
66.6
34.5
Minor 5ss
42.3
-0.9
2.8
52.9
38.3
Minor BPS
65.4
0.46
1.6
73.1
38.8

Associated Gene:

Gene:
IFT122
Ensembl Gene ID:
ENSAPLG00000004234
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027255
10855772 - 10888274
32503