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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_10857814_10858648_R

Intron Information:

Intron Rank:
26
Intron Class:
minor
Intron Phase:
1
Intron Coordinates:
10857814 - 10858648
Intron Length:
835

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTATCCTGT
5'SS Class:
strong_minor
3'SS Sequence:
GAAATGTCTTTAG|A
3'SS Class:
minor_BPS
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TCTTCCTTAAGA
Flanking Amino Acid:
ENKWQEMMSDNAQSLRLDDN
Intron Amino Acid Position:
1074

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
49.4
-0
1.2
47.3
43.8
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
60.3
0.23
1
55.4
45.1
Minor 5ss
82.8
1.1
1.6
86.7
30.3
Minor BPS
77.8
0.87
1.6
83.03
38.2

Associated Gene:

Gene:
IFT122
Ensembl Gene ID:
ENSAPLG00000004234
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028789
10856126 - 10888274
32149
ENSAPLT00000020502
10855772 - 10888274
32503
ENSAPLT00000004413
10855772 - 10888274
32503
ENSAPLT00000036532
10856339 - 10888274
31936
ENSAPLT00000028828
10856126 - 10888274
32149