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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_10858778_10859214_R

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10858778 - 10859214
Intron Length:
437

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGCGTTGG
5'SS Class:
major
3'SS Sequence:
CACACCCCTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTGTTTTTCACA
Flanking Amino Acid:
QPFVFSASSYEVLHLVEFYL
Intron Amino Acid Position:
1031

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1
58.6
42.8
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
63.6
0.31
0.8
58.9
32.4
Minor 5ss
33.2
-1.9
3
37.4
42.4
Minor BPS
62.5
0.39
1.7
74.03
38.5

Associated Gene:

Gene:
IFT122
Ensembl Gene ID:
ENSAPLG00000004234
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028828
10856126 - 10888274
32149
ENSAPLT00000028789
10856126 - 10888274
32149
ENSAPLT00000020502
10855772 - 10888274
32503
ENSAPLT00000004413
10855772 - 10888274
32503
ENSAPLT00000036532
10856339 - 10888274
31936