Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_10859327_10860318_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

10859327 - 10860318

Intron Length:

992

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAA|GTAAGTTGC

5'SS Class:

strong_major

3'SS Sequence:

TGTGTCTTTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGTTTAT

U12 Branch Point Sequence:

TTTATGGTTACT

Flanking Amino Acid:

IRSKPFHDSEELVPLCYRCS

Intron Amino Acid Position:

994

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.8

0.82

0.9

34.8

Major BPS

81.3

0.78

1.1

71.7

44.6

Major PPT

83.1

0.74

0.9

77.1

37.1

Minor 5ss

42.3

-0.9

2.8

52.9

38.3

Minor BPS

42.3

-0.5

2.8

72.01

44.9

Associated Gene:

Gene:

IFT122

Ensembl Gene ID:

ENSAPLG00000004234

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000028828

10856126 - 10888274

32149

ENSAPLT00000028789

10856126 - 10888274

32149

ENSAPLT00000020502

10855772 - 10888274

32503

ENSAPLT00000004413

10855772 - 10888274

32503

ENSAPLT00000036532

10856339 - 10888274

31936