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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_10860485_10862199_R

Intron Information:

Intron Rank:
23
Intron Class:
minor
Intron Phase:
2
Intron Coordinates:
10860485 - 10862199
Intron Length:
1715

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTATCCTTC
5'SS Class:
strong_minor
3'SS Sequence:
AATTTAATTGTAG|T
3'SS Class:
strong_BPS
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TATTCCTTAATT
Flanking Amino Acid:
TKETPLGISKVNTLFALAKQ
Intron Amino Acid Position:
938

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
49.1
-0
1.3
49.7
42.2
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
71.1
0.48
1
64.6
40.6
Minor 5ss
92
1.41
0.9
85.2
32.2
Minor BPS
90.8
1.36
0.8
97.44
26.3

Associated Gene:

Gene:
IFT122
Ensembl Gene ID:
ENSAPLG00000004234
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004413
10855772 - 10888274
32503
ENSAPLT00000028828
10856126 - 10888274
32149
ENSAPLT00000028789
10856126 - 10888274
32149
ENSAPLT00000027255
10855772 - 10888274
32503
ENSAPLT00000020502
10855772 - 10888274
32503
ENSAPLT00000036532
10856339 - 10888274
31936