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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_10862301_10863167_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10862301 - 10863167
Intron Length:
867

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGGTAT
5'SS Class:
strong_major
3'SS Sequence:
TTTAATACTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTATTTTTAATA
Flanking Amino Acid:
HVYHYIQRYTEEPFSFHLPE
Intron Amino Acid Position:
905

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
1
76
35.9
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
77.7
0.62
0.9
71.1
39.1
Minor 5ss
38.9
-1.3
3.4
56.2
48
Minor BPS
76.4
0.83
1
79.34
30.5

Associated Gene:

Gene:
IFT122
Ensembl Gene ID:
ENSAPLG00000004234
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028789
10856126 - 10888274
32149
ENSAPLT00000027255
10855772 - 10888274
32503
ENSAPLT00000020502
10855772 - 10888274
32503
ENSAPLT00000036532
10856339 - 10888274
31936
ENSAPLT00000004413
10855772 - 10888274
32503
ENSAPLT00000028828
10856126 - 10888274
32149