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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_10871438_10875334_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10871438 - 10875334
Intron Length:
3897

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGTAG
5'SS Class:
major
3'SS Sequence:
TTCTTTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGATCAT
U12 Branch Point Sequence:
TGTTCTACATCT
Flanking Amino Acid:
EGLEFETAKKERKKHGENVN
Intron Amino Acid Position:
657

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.7
1
69
38.3
Major BPS
73
0.57
1.2
74
41.2
Major PPT
94.1
0.99
0.6
87.9
29.5
Minor 5ss
35.4
-1.7
3.3
45.9
49.3
Minor BPS
48.4
-0
2
74.14
42.4

Associated Gene:

Gene:
IFT122
Ensembl Gene ID:
ENSAPLG00000004234
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028828
10856126 - 10888274
32149