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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_10873635_10875334_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10873635 - 10875334
Intron Length:
1700

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGTAG
5'SS Class:
major
3'SS Sequence:
TTCTTTTCAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TTCTTTTCAATA
Flanking Amino Acid:
EGLEFETAKKAFTRIRDLRY
Intron Amino Acid Position:
606

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.7
1
69
38.3
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
79.5
0.66
0.8
77.6
29.7
Minor 5ss
35.4
-1.7
3.3
45.9
49.3
Minor BPS
61.9
0.37
1.5
70.41
36.7

Associated Gene:

Gene:
IFT122
Ensembl Gene ID:
ENSAPLG00000004234
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020502
10855772 - 10888274
32503
ENSAPLT00000004413
10855772 - 10888274
32503
ENSAPLT00000036532
10856339 - 10888274
31936
ENSAPLT00000028789
10856126 - 10888274
32149
ENSAPLT00000027255
10855772 - 10888274
32503