Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_10877279_10878112_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

10877279 - 10878112

Intron Length:

834

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAAACTT

5'SS Class:

strong_major

3'SS Sequence:

TTTTGTTCATTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TAATCAT

U12 Branch Point Sequence:

ATTTTGTTCATT

Flanking Amino Acid:

DIHTKELLFQEPNANSVAWN

Intron Amino Acid Position:

493

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.8

0.77

0.9

77.9

36.7

Major BPS

80.4

0.76

80.3

31.8

Major PPT

78.3

0.64

0.9

34.3

Minor 5ss

37.2

-1.4

3.4

56.5

47.6

Minor BPS

49.5

0.05

2.4

77.24

40.1

Associated Gene:

Gene:

IFT122

Ensembl Gene ID:

ENSAPLG00000004234

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000027255

10855772 - 10888274

32503

ENSAPLT00000020502

10855772 - 10888274

32503

ENSAPLT00000036532

10856339 - 10888274

31936

ENSAPLT00000004413

10855772 - 10888274

32503

ENSAPLT00000028828

10856126 - 10888274

32149

ENSAPLT00000028789

10856126 - 10888274

32149