Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_10878278_10878961_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

10878278 - 10878961

Intron Length:

684

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAACACAT

5'SS Class:

major

3'SS Sequence:

CAAATATGTCTAG|A

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TTCAAAT

U12 Branch Point Sequence:

TTTGTTTCAAAT

Flanking Amino Acid:

GLLVGLKNGQILKIFVDNVF

Intron Amino Acid Position:

438

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.6

0.65

1.1

71.6

40.1

Major BPS

77.3

0.68

81.5

Major PPT

56.9

0.16

1.1

47.6

44.5

Minor 5ss

39.2

-1.2

3.2

56.5

47.6

Minor BPS

55.5

0.25

1.7

76.7

40.1

Associated Gene:

Gene:

IFT122

Ensembl Gene ID:

ENSAPLG00000004234

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000028828

10856126 - 10888274

32149

ENSAPLT00000027255

10855772 - 10888274

32503

ENSAPLT00000020502

10855772 - 10888274

32503

ENSAPLT00000004413

10855772 - 10888274

32503

ENSAPLT00000036532

10856339 - 10888274

31936