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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_10878278_10879582_R

Intron Information:

Intron Rank:
12
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
10878278 - 10879582
Intron Length:
1305

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTGCC
5'SS Class:
strong_major
3'SS Sequence:
CAAATATGTCTAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCAAAT
U12 Branch Point Sequence:
TTTGTTTCAAAT
Flanking Amino Acid:
VCSDHIILCQILKIFVDNVF
Intron Amino Acid Position:
443

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
75
33.4
Major BPS
77.3
0.68
1
81.5
27
Major PPT
56.9
0.16
1.1
47.6
44.5
Minor 5ss
40
-1.1
3
53.2
44.1
Minor BPS
55.5
0.25
1.7
76.7
40.1

Associated Gene:

Gene:
IFT122
Ensembl Gene ID:
ENSAPLG00000004234
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028789
10856126 - 10888274
32149