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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_10879786_10880437_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10879786 - 10880437
Intron Length:
652

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTTCA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCTCTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATACTAT
U12 Branch Point Sequence:
CAGCCTATACTA
Flanking Amino Acid:
IVQHLITEQKVRIKGRELVK
Intron Amino Acid Position:
324

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
79.6
29.3
Major BPS
53.3
0.08
1.3
52.9
42.3
Major PPT
84.4
0.77
0.7
77.7
31.1
Minor 5ss
40.6
-1.1
2.7
51.2
45.1
Minor BPS
42.6
-0.5
1.7
46.25
37.6

Associated Gene:

Gene:
IFT122
Ensembl Gene ID:
ENSAPLG00000004234
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028789
10856126 - 10888274
32149
ENSAPLT00000027255
10855772 - 10888274
32503
ENSAPLT00000020502
10855772 - 10888274
32503
ENSAPLT00000036532
10856339 - 10888274
31936
ENSAPLT00000004413
10855772 - 10888274
32503
ENSAPLT00000028828
10856126 - 10888274
32149