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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_10880577_10881338_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10880577 - 10881338
Intron Length:
762

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTAGG
5'SS Class:
strong_major
3'SS Sequence:
TCCTTGTGTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATTAT
U12 Branch Point Sequence:
TACCAATTAACT
Flanking Amino Acid:
CKAKPDSNYVAVGCQDGTIS
Intron Amino Acid Position:
278

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
70.5
41.3
Major BPS
68.1
0.45
1
58.1
38.5
Major PPT
77.6
0.62
0.9
75.9
38
Minor 5ss
29.8
-2.3
2.6
30.3
36.7
Minor BPS
55.3
0.24
1.8
73.45
42.4

Associated Gene:

Gene:
IFT122
Ensembl Gene ID:
ENSAPLG00000004234
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027255
10855772 - 10888274
32503
ENSAPLT00000020502
10855772 - 10888274
32503
ENSAPLT00000036532
10856339 - 10888274
31936
ENSAPLT00000004413
10855772 - 10888274
32503
ENSAPLT00000028828
10856126 - 10888274
32149
ENSAPLT00000028789
10856126 - 10888274
32149