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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_10882078_10883534_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10882078 - 10883534
Intron Length:
1457

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATAAT
5'SS Class:
strong_major
3'SS Sequence:
TTGTTGTCTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAAAAAT
U12 Branch Point Sequence:
TTGCCATTAACT
Flanking Amino Acid:
PIWSICWNPSRDERNDTLAV
Intron Amino Acid Position:
188

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.4
0.93
0.8
89.4
23.3
Major BPS
62.8
0.32
1.1
67.9
34.4
Major PPT
79.4
0.66
0.8
77.9
36.6
Minor 5ss
36.8
-1.5
2.9
50.6
45.9
Minor BPS
72.3
0.78
1.6
87.1
38

Associated Gene:

Gene:
IFT122
Ensembl Gene ID:
ENSAPLG00000004234
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004413
10855772 - 10888274
32503