Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_10885250_10886047_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

10885250 - 10886047

Intron Length:

798

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAC|GTAAGTGAT

5'SS Class:

strong_major

3'SS Sequence:

AACTTCATTCTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ACTTCAT

U12 Branch Point Sequence:

ACTTACTGAAAT

Flanking Amino Acid:

TSKLEGILKYTHNDSIQCVS

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.5

0.72

1.2

81.4

32.7

Major BPS

78.6

0.71

79.6

32.9

Major PPT

69.1

0.43

0.9

59.9

40.7

Minor 5ss

35.7

-1.6

3.3

48.3

41.3

Minor BPS

56.2

0.27

1.8

74.08

41.9

Associated Gene:

Gene:

IFT122

Ensembl Gene ID:

ENSAPLG00000004234

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000027255

10855772 - 10888274

32503

ENSAPLT00000020502

10855772 - 10888274

32503

ENSAPLT00000036532

10856339 - 10888274

31936

ENSAPLT00000004413

10855772 - 10888274

32503

ENSAPLT00000028828

10856126 - 10888274

32149

ENSAPLT00000028789

10856126 - 10888274

32149