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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_10886127_10886965_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10886127 - 10886965
Intron Length:
839

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAATACC
5'SS Class:
major
3'SS Sequence:
ATTTAATTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTATATTTAATT
Flanking Amino Acid:
TVYCVAYAKDGKRFASGSAD
Intron Amino Acid Position:
65

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
73.9
34.6
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
71.8
0.49
0.9
63.4
42.3
Minor 5ss
36.5
-1.5
2.8
43.6
37.8
Minor BPS
72.9
0.8
1.4
85.75
34.2

Associated Gene:

Gene:
IFT122
Ensembl Gene ID:
ENSAPLG00000004234
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027255
10855772 - 10888274
32503
ENSAPLT00000020502
10855772 - 10888274
32503
ENSAPLT00000036532
10856339 - 10888274
31936
ENSAPLT00000004413
10855772 - 10888274
32503
ENSAPLT00000028828
10856126 - 10888274
32149
ENSAPLT00000028789
10856126 - 10888274
32149