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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_10888011_10888123_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10888011 - 10888123
Intron Length:
113

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGCGGC
5'SS Class:
major
3'SS Sequence:
GTCTCTCCCGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTCAC
U12 Branch Point Sequence:
CCTTGCTCACCC
Flanking Amino Acid:
ALTWRDQAEHCIYDLAFKPD
Intron Amino Acid Position:
14

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.4
0.6
1
59.3
40.2
Major BPS
69.8
0.49
1.1
71.3
36.7
Major PPT
75.2
0.57
0.8
69.4
31.3
Minor 5ss
31.4
-2.1
3.3
37.8
42.4
Minor BPS
45.7
-0.3
2.2
57.89
47.1

Associated Gene:

Gene:
IFT122
Ensembl Gene ID:
ENSAPLG00000004234
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027255
10855772 - 10888274
32503
ENSAPLT00000020502
10855772 - 10888274
32503
ENSAPLT00000036532
10856339 - 10888274
31936
ENSAPLT00000004413
10855772 - 10888274
32503
ENSAPLT00000028828
10856126 - 10888274
32149
ENSAPLT00000028789
10856126 - 10888274
32149