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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_10894118_10894335_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10894118 - 10894335
Intron Length:
218

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAGCT
5'SS Class:
strong_major
3'SS Sequence:
CCTATTCCTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAG
U12 Branch Point Sequence:
TTTTCCCTATTC
Flanking Amino Acid:
HQSDRYVKIKRNWRKPRGID
Intron Amino Acid Position:
33

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
74.9
33.2
Major BPS
67.4
0.43
1.5
65.3
43.7
Major PPT
80.3
0.68
0.8
77.1
31.5
Minor 5ss
32.4
-2
3.5
48.3
47.4
Minor BPS
62.7
0.38
1.9
79.12
36.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004194
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004302
10894017 - 10895041
1025