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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_10894518_10894911_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10894518 - 10894911
Intron Length:
394

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
CTGCTCCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTCAA
U12 Branch Point Sequence:
ACTCCATTCAAG
Flanking Amino Acid:
KELEVLMMSNKSYCAEIAHN
Intron Amino Acid Position:
93

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.81
0.9
75.5
40.6
Major BPS
70.6
0.51
1
73.3
31.3
Major PPT
71.8
0.49
0.8
65.7
30.3
Minor 5ss
39.5
-1.2
3
50.7
39.9
Minor BPS
43.7
-0.6
2.1
49.89
43.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004194
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004302
10894017 - 10895041
1025