About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_10897459_10897810_R

Intron Information:

Intron Rank:
13
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
10897459 - 10897810
Intron Length:
352

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGGGTAGA
5'SS Class:
major
3'SS Sequence:
ACCTCCACTTAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTCTATTTAATT
Flanking Amino Acid:
DGLKDHYDIREVQQWHNPCG
Intron Amino Acid Position:
1126

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.5
0.53
1.1
65
42.7
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
59.8
0.22
1
61.6
33.2
Minor 5ss
27.8
-2.5
2.8
24.1
37
Minor BPS
71.9
0.76
1.4
84.41
36.8

Associated Gene:

Gene:
CAND2
Ensembl Gene ID:
ENSAPLG00000003936
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004039
10897329 - 10911894
14566