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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_10897976_10898092_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10897976 - 10898092
Intron Length:
117

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGTCCT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTGTTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTTAG
U12 Branch Point Sequence:
TTCTTGTTTAAG
Flanking Amino Acid:
TKVRRELIREVEMGPFKHTV
Intron Amino Acid Position:
1071

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
77.1
37.8
Major BPS
48
-0.1
1.6
46.8
46.7
Major PPT
78
0.63
1
82.8
32.6
Minor 5ss
42.9
-0.8
2.8
59.8
44.7
Minor BPS
44.2
-0.6
2.4
55.62
45.6

Associated Gene:

Gene:
CAND2
Ensembl Gene ID:
ENSAPLG00000003936
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021423
10896281 - 10911894
15614
ENSAPLT00000004041
10896281 - 10911143
14863
ENSAPLT00000004039
10897329 - 10911894
14566