Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_10898263_10898945_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

10898263 - 10898945

Intron Length:

683

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAG|GTAGGCTAG

5'SS Class:

major

3'SS Sequence:

TCGTATCCCCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCGTAT

U12 Branch Point Sequence:

GTGTTCGTATCC

Flanking Amino Acid:

PIDALLKSCIGDFLKTLEDS

Intron Amino Acid Position:

1014

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.9

0.68

1.1

65.8

42.7

Major BPS

66.5

0.41

1.4

65.7

43.2

Major PPT

71.1

0.47

0.9

62.1

39.6

Minor 5ss

41.8

-0.9

3.2

54.5

49.7

Minor BPS

47.6

-0.2

2.2

62.19

43.5

Associated Gene:

Gene:

CAND2

Ensembl Gene ID:

ENSAPLG00000003936

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000021423

10896281 - 10911894

15614

ENSAPLT00000004041

10896281 - 10911143

14863

ENSAPLT00000004039

10897329 - 10911894

14566