About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_10899042_10899420_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10899042 - 10899420
Intron Length:
379

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGTGTGA
5'SS Class:
major
3'SS Sequence:
ATCTTCATCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
ATCTTCATCACA
Flanking Amino Acid:
LPRLKKQLSSGSPHARSTVV
Intron Amino Acid Position:
982

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.1
0.45
1.1
59.4
42
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
75.8
0.58
0.9
69.6
34.8
Minor 5ss
34.8
-1.7
3.5
47.2
48.2
Minor BPS
49.5
-0
2
65.96
40.6

Associated Gene:

Gene:
CAND2
Ensembl Gene ID:
ENSAPLG00000003936
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021423
10896281 - 10911894
15614
ENSAPLT00000004041
10896281 - 10911143
14863
ENSAPLT00000004039
10897329 - 10911894
14566