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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_10902292_10902919_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10902292 - 10902919
Intron Length:
628

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGCGTGAG
5'SS Class:
strong_major
3'SS Sequence:
TTCCAAATTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCCAA
U12 Branch Point Sequence:
CTTTTCCAAATT
Flanking Amino Acid:
DVPLTMLQNQVPNIVKALHK
Intron Amino Acid Position:
433

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
68.6
38.4
Major BPS
68.1
0.45
1.3
78.7
34.9
Major PPT
73.9
0.54
0.9
66.7
38
Minor 5ss
25.5
-2.8
3.1
30.6
43.3
Minor BPS
52.3
0.15
2
75.59
41.9

Associated Gene:

Gene:
CAND2
Ensembl Gene ID:
ENSAPLG00000003936
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021423
10896281 - 10911894
15614
ENSAPLT00000004041
10896281 - 10911143
14863
ENSAPLT00000004039
10897329 - 10911894
14566