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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_10904354_10905029_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10904354 - 10905029
Intron Length:
676

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGCCTGCT
5'SS Class:
major
3'SS Sequence:
TCCCTGATCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAA
U12 Branch Point Sequence:
TTTTCCCTGATC
Flanking Amino Acid:
ETENGEDEEQGEVRQVFLAP
Intron Amino Acid Position:
335

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.9
0.45
1.2
66
39.9
Major BPS
73.5
0.59
1
81.3
29.9
Major PPT
70.9
0.47
0.9
64.2
35.4
Minor 5ss
34.4
-1.8
3.4
50.5
46
Minor BPS
70.7
0.63
1.6
82.69
30.7

Associated Gene:

Gene:
CAND2
Ensembl Gene ID:
ENSAPLG00000003936
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021423
10896281 - 10911894
15614