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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_10905179_10905845_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10905179 - 10905845
Intron Length:
667

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGTGTGCC
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTGTGATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
GATTTATTAACT
Flanking Amino Acid:
CFQAFESFVRRCPKEIDPHI
Intron Amino Acid Position:
285

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
71
32.7
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
71.5
0.48
1
68.8
42.1
Minor 5ss
34.6
-1.8
3.1
44.1
43.8
Minor BPS
70
0.71
1.6
83.25
37

Associated Gene:

Gene:
CAND2
Ensembl Gene ID:
ENSAPLG00000003936
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021423
10896281 - 10911894
15614
ENSAPLT00000004041
10896281 - 10911143
14863
ENSAPLT00000004039
10897329 - 10911894
14566