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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_10905952_10906559_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10905952 - 10906559
Intron Length:
608

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAGGACAA
5'SS Class:
major
3'SS Sequence:
TTGTCTTTCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
ATGTGTTTTATT
Flanking Amino Acid:
GISRQAGHRIGEHLEKIIPL
Intron Amino Acid Position:
250

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71
0.5
1.1
59.1
41.7
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
83.5
0.75
0.8
76.7
37.4
Minor 5ss
30.4
-2.2
3.3
39.1
46.2
Minor BPS
49
0
2
69.26
42.8

Associated Gene:

Gene:
CAND2
Ensembl Gene ID:
ENSAPLG00000003936
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021423
10896281 - 10911894
15614
ENSAPLT00000004041
10896281 - 10911143
14863
ENSAPLT00000004039
10897329 - 10911894
14566