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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_10907566_10908476_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10907566 - 10908476
Intron Length:
911

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGACAA
5'SS Class:
strong_major
3'SS Sequence:
CTCTCTCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TCTTTTTAACTG
Flanking Amino Acid:
VISELPPAATGSTMTANVCK
Intron Amino Acid Position:
123

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.2
0.95
0.8
76.9
33.7
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
85.4
0.8
0.7
80.1
25.2
Minor 5ss
31.3
-2.1
3
38.6
46.4
Minor BPS
46.5
-0.4
1.9
53.3
43.2

Associated Gene:

Gene:
CAND2
Ensembl Gene ID:
ENSAPLG00000003936
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004041
10896281 - 10911143
14863
ENSAPLT00000004039
10897329 - 10911894
14566
ENSAPLT00000021423
10896281 - 10911894
15614