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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_10908632_10910232_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10908632 - 10910232
Intron Length:
1601

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGCCAT
5'SS Class:
major
3'SS Sequence:
TCTCCTCCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
TCGTTCTGACTG
Flanking Amino Acid:
MGQFTHRAPESLGPLVGKVK
Intron Amino Acid Position:
11

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.1
0.59
1
64.9
42.8
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
82.8
0.74
0.7
77.1
24.8
Minor 5ss
32.7
-2
3.4
46.2
49.1
Minor BPS
47.4
-0.3
1.8
50.93
44.2

Associated Gene:

Gene:
CAND2
Ensembl Gene ID:
ENSAPLG00000003936
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004041
10896281 - 10911143
14863