Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_10908632_10910999_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

10908632 - 10910999

Intron Length:

2368

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GTG|GTAAGCGCC

5'SS Class:

strong_major

3'SS Sequence:

TCTCCTCCTGCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCTGAC

U12 Branch Point Sequence:

TCGTTCTGACTG

Flanking Amino Acid:

NGEVQNLAVKCLGPLVGKVK

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.4

0.72

66.9

40.1

Major BPS

81.4

0.78

0.9

71.3

36.7

Major PPT

82.8

0.74

0.7

77.1

24.8

Minor 5ss

37.7

-1.4

3.3

48.2

42.1

Minor BPS

47.4

-0.3

1.8

50.93

44.2

Associated Gene:

Gene:

CAND2

Ensembl Gene ID:

ENSAPLG00000003936

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000021423

10896281 - 10911894

15614

ENSAPLT00000004039

10897329 - 10911894

14566