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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_10915782_10916271_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10915782 - 10916271
Intron Length:
490

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
AATGTGTTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATAAAT
U12 Branch Point Sequence:
ACCCTTCTAACT
Flanking Amino Acid:
GGCDNLVKIWKEEDGQWKEE
Intron Amino Acid Position:
195

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.86
0.9
81.6
29.9
Major BPS
74.5
0.61
1
79.6
29.1
Major PPT
74.6
0.55
1
70
45
Minor 5ss
37
-1.5
3.3
50.9
39.6
Minor BPS
49.2
0.02
1.7
63.58
41

Associated Gene:

Gene:
SEC13
Ensembl Gene ID:
ENSAPLG00000003815
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003916
10911958 - 10918675
6718