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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_10920344_10920813_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10920344 - 10920813
Intron Length:
470

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATTTT
5'SS Class:
strong_major
3'SS Sequence:
GCTTGCTTTCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATGTTAT
U12 Branch Point Sequence:
TGGATGTTATTT
Flanking Amino Acid:
FLSPEFKKIQQQNDPTKTTA
Intron Amino Acid Position:
37

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
90.3
22.3
Major BPS
72.5
0.56
1.2
63.4
44
Major PPT
74.6
0.55
0.9
65.6
41
Minor 5ss
45.5
-0.5
3
66.9
44.4
Minor BPS
43.9
-0.3
2.2
60.47
43.7

Associated Gene:

Gene:
GHRL
Ensembl Gene ID:
ENSAPLG00000003792
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003876
10920236 - 10922388
2153