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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_10920928_10921384_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10920928 - 10921384
Intron Length:
457

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTCGTATT
5'SS Class:
major
3'SS Sequence:
AATGTTTTTACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TGTCCATTAAAC
Flanking Amino Acid:
EDGNDSIELKFHVPFEIGVK
Intron Amino Acid Position:
75

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1.2
83.1
35.7
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
79.9
0.67
0.9
72.9
41.4
Minor 5ss
37
-1.5
3
52
44.5
Minor BPS
60.7
0.32
1.7
71.98
37.9

Associated Gene:

Gene:
GHRL
Ensembl Gene ID:
ENSAPLG00000003792
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003876
10920236 - 10922388
2153