About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_10921494_10922368_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10921494 - 10922368
Intron Length:
875

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTTTCA
5'SS Class:
major
3'SS Sequence:
TTTGCCTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
ATTTTCAAAATA
Flanking Amino Acid:
LQDILKDNAKETPVKS*
Intron Amino Acid Position:
111

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1.1
70.7
35.9
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
83.3
0.75
0.7
81.5
30.4
Minor 5ss
39.5
-1.2
2.9
51.3
45.1
Minor BPS
53
0.09
1.9
70.04
36.5

Associated Gene:

Gene:
GHRL
Ensembl Gene ID:
ENSAPLG00000003792
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003876
10920236 - 10922388
2153