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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_10927856_10928224_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10927856 - 10928224
Intron Length:
369

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATCTA
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTATTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
ATTTTCTCAACA
Flanking Amino Acid:
ADLEPSCSSQAIARETSWKI
Intron Amino Acid Position:
693

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.9
80.4
34.2
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
87.9
0.85
0.8
85.7
33.4
Minor 5ss
37.2
-1.5
3.1
49.8
46.4
Minor BPS
73.7
0.74
1.4
81.94
32.6

Associated Gene:

Gene:
IRAK2
Ensembl Gene ID:
ENSAPLG00000003679
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003774
10925529 - 10941556
16028