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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_10929110_10929571_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10929110 - 10929571
Intron Length:
462

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGGCTA
5'SS Class:
strong_major
3'SS Sequence:
TTCCTTTGAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATGTAAT
U12 Branch Point Sequence:
TTTCCTTTGAAC
Flanking Amino Acid:
LDEGRHPIYLKDMIADEIKT
Intron Amino Acid Position:
454

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
1
71.4
40.1
Major BPS
75.6
0.64
1.1
75.7
36.5
Major PPT
74.9
0.56
1
72.5
36.4
Minor 5ss
34.5
-1.8
3.4
44.3
44.6
Minor BPS
67.1
0.52
1.4
76.47
33.2

Associated Gene:

Gene:
IRAK2
Ensembl Gene ID:
ENSAPLG00000003679
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003774
10925529 - 10941556
16028