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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_10930804_10931522_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10930804 - 10931522
Intron Length:
719

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGCAAT
5'SS Class:
strong_major
3'SS Sequence:
CCTCTCTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATAAA
U12 Branch Point Sequence:
AAAATAAAAACA
Flanking Amino Acid:
GSLQNQLQCQDDSSPLTWEM
Intron Amino Acid Position:
331

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
80.7
33.7
Major BPS
62
0.3
1
62.3
30.4
Major PPT
85.1
0.79
0.7
79.7
25.6
Minor 5ss
42.8
-0.8
2.9
58
40.7
Minor BPS
39.3
-0.8
1.9
46.88
35.5

Associated Gene:

Gene:
IRAK2
Ensembl Gene ID:
ENSAPLG00000003679
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003774
10925529 - 10941556
16028