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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_10934269_10934967_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10934269 - 10934967
Intron Length:
699

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
GATTCAATTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
GTATTTTCAATG
Flanking Amino Acid:
SSQLGISPARDAVSEGALYS
Intron Amino Acid Position:
170

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.8
79.4
28.8
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
72.7
0.51
1
67.7
42.3
Minor 5ss
32.1
-2
3.1
36.8
41.9
Minor BPS
52.8
-0
1.6
56.63
39.3

Associated Gene:

Gene:
IRAK2
Ensembl Gene ID:
ENSAPLG00000003679
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003774
10925529 - 10941556
16028