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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_10940989_10941399_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10940989 - 10941399
Intron Length:
411

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTGAGCGCC
5'SS Class:
major
3'SS Sequence:
CCCCTCCCGCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
CCGTTCTGAAGC
Flanking Amino Acid:
CLGDHDWMRFASYVITDQTE
Intron Amino Acid Position:
53

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1
60.6
38.8
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
64.8
0.33
0.9
57.3
33.4
Minor 5ss
32.6
-2
3.3
43.1
44.2
Minor BPS
48.3
-0.1
1.8
53.88
44.4

Associated Gene:

Gene:
IRAK2
Ensembl Gene ID:
ENSAPLG00000003679
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003774
10925529 - 10941556
16028